Senior Bioinformatics Software Engineer

🕒 Agosto 24

🇺🇸 Estados Unidos – Remoto (EUA)

⏰ Tempo Integral

🟠 Sênior

🧑‍💻 Engenheiro Full-stack

👻 Score fantasma 10%

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🗣️🇺🇸🇬🇧 Inglês obrigatório

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Logo of Baylor Genetics

Baylor Genetics

501 - 1000 funcionários

Fundada em 1978

🏥 Saúde

💼 Consultoria

🍽️ Alimentos e Bebidas

Healthcare • Consulting • Food & Beverage

A Baylor Genetics é um laboratório de genômica clínica e diagnóstico de precisão afiliado ao Baylor College of Medicine, que oferece serviços abrangentes de teste genético e interpretação. A empresa oferece sequenciamento do genoma completo e do exoma completo, análise cromossômica por microarray, testes mitocondriais, farmacogenômica e ensaios especializados, juntamente com aconselhamento genético, suporte para prestadores de serviços e recursos de seguro/pagamento. A Baylor Genetics apoia prestadores de saúde, pesquisadores e famílias com interpretação aprimorada por IA, integração de dados multimodais e serviços clínicos e laboratoriais de ponta a ponta.

Descrição

• Design, develop, and maintain scalable and efficient software solutions for Baylor Genetics’ bioinformatic pipelines • Collaborate with and support cross-functional teams to deliver data-driven software solutions aligned with business needs • Create and optimize data models for assembly, mapping, variant calling, and variant annotation • Develop and optimize ETL processes using APIs • Analyze and optimize SQL queries and database performance • Contribute to database schema design and review sessions • Develop interactive dashboards and automated reports using BI tools such as Azure Pipelines, Teams Power Automate, email, and Nextflow • Collaborate with data analysts, business users, clinical reviewers, laboratory personnel, and software developers to scope requirements and deliver integrations • Integrate disparate data sources and ensure data consistency, accuracy, and reliability • Conduct rigorous testing and automate testing suites using pytest, doctest, and Azure Pipelines • Create comprehensive documentation, including inline comments, genomic diagrams, docstrings, headers, wikis, README files, and trace mappings • Provide support and maintenance for developed solutions • Perform other advanced job-related duties as assigned

🎯 Requisitos

• Bachelor’s degree in Computer Science, Software Engineering, Bioinformatics or a related field; Master’s degree preferred • Minimum of 5 years of experience in software development • Proven track record of designing and implementing scalable software solutions based on diverse user feature needs • Proven track record of implementing production ready software solutions from scratch • Deep knowledge and expertise in at least two programming languages: Python, Perl, R, or Bash; Java, C++, and Groovy also considered • Proficiency with SQL Server, NoSQL, MongoDB, MySQL, and ElasticSearch • Proficiency in Agile frameworks and CI/CD practices using Git • Object-oriented programming and standard software design practices • Ability to build performant, highly maintainable, tested, production-ready software packages from scratch • Solid understanding and practice of unit and integration testing • Proficiency in designing and building APIs and microservices from scratch • Solid understanding of package management practices, including PIP and Conda • Containerization experience with Docker and Singularity • Strong analytical and problem-solving skills • Ability to translate complex business needs into technical solutions and work independently • Good communication skills and flexibility to engage stakeholders and subject-matter experts • Experience managing individual projects and adhering to timelines • Familiarity with Linux OS and HPC clusters is a plus, but not essential • Familiarity with workflow management/orchestration tools such as Nextflow, Airflow, or Snakemake is a plus, but not essential

🏖️ Benefícios

• Equal opportunity employer dedicated to building an inclusive and diverse workforce • Remote work arrangement

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