Research Associate II – MC&G

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🔥 0 minutes ago

🍂 Massachusetts – Remote

🍂 Massachusetts – Remote

💵 $71k - $91.8k / year

⏰ Full Time

🟢 Junior

🟡 Mid-level

🔬 Research Analyst

👻 Ghost score 0%

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Cape Cod Technology Council, Inc.

WebsiteLinkedInAll Job Openings

1 - 10 employees

Founded 1996

💼 Consulting

🏥 Healthcare

📚 Education

Consulting • Healthcare • Education

Cape Cod Technology Council, Inc. is an organization dedicated to fostering innovation and collaboration in the technology sector on Cape Cod. It serves as a hub for tech-related initiatives, providing resources and networking opportunities for local businesses and professionals. The council supports advancements in various tech fields, aiming to boost the regional economy through technology-driven growth.

📋 Description

• Process and analyze marine microbial sequence datasets in the Microbial Ecology for Ocean Conservation Laboratory • Develop and run bioinformatic pipelines for data projects • Conduct processing, statistical analysis, integration, and visualization of marine microbial sequence-based datasets • Develop bioinformatics and data analysis platforms for poorly characterized organisms and environmental systems, especially corals and coral reef ecosystems • Contribute to data analysis and data management for research-related tasks • Integrate projects and tools with the existing high-performance computing cluster • Train students and staff in analysis methods when applicable • Balance multiple projects • Work under the supervision of the laboratory led by Dr. Amy Apprill

🎯 Requirements

• Master’s degree in Computer Science, Bioinformatics, Oceanography, Microbiology, Chemistry, Environmental Science or a related field is required, or a Bachelor’s degree with multiple years of experience • Relevant work experience is desirable • Bioinformatics experience or training is desirable • Experience in marine microbiology is desirable • Interest in coral reef environments is desirable • Experience with comparative genomics, phylogenomics, gene and protein-family analysis, genomic-context and functional inference, genotype-to-phenotype hypothesis generation, biosynthetic gene clusters, metabolic pathways, genome and metagenome assembly and annotation, metagenomics, metatranscriptomics, long-read sequencing, HMM-based analyses, protein clustering, large-scale sequence comparison, and 16S rRNA gene analysis • Proficiency in Python and scientific libraries, R, Bash/Unix, SQL, Nextflow or Snakemake, HPC systems, SLURM or Sun Grid Engine, AWS, Git, and scalable computational workflows • Familiarity with MEGAHIT, Prodigal, HMMER/Pfam, CD-HIT, GATK, and comparative and phylogenetic analysis software • Hands-on experience with sequencing approaches, DNA and RNA isolation, PCR, qRT-PCR, microbial cultivation and fermentation, and experimental design connecting genomic predictions to biological phenotypes is preferred • Ability to balance multiple projects • Full curriculum vitae including contact information for three references • Detailed cover letter outlining prior experience relevant to the position

🏖️ Benefits

• Full benefits • Comprehensive benefits package • Full-time exempt position • Renewable annually depending on performance and funding availability